📚 Guides# Force fields Structure inputs Partial and Full Definitions Water models MDP options modification based on the force field. AMBER and CHARMM36-like force fields example Final note BindFlow’s deploy Running workflow partially Customizing the Workflow cluster extra_directives (optional) nwindows (optional) mmpbsa (optional) mdp (optional) Suggested options for MM(PB/GB)SA calculations Debugging BindFlow runs Performance estimation Methodology followed for the estimation of ligand completion time GROMACS benchmark Pipeline completion time Disk use
